pymc.trace_cov#

pymc.trace_cov(trace, vars=None, model=None)[source]#

Calculate the flattened covariance matrix using a sample trace

Useful if you want to base your covariance matrix for further sampling on some initial samples.

Parameters
trace: Trace
vars: list

variables for which to calculate covariance matrix

Returns
r: array (n,n)

covariance matrix